| Item Type | Name |
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Concept
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Alleles
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Concept
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Amino Acid Sequence
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Concept
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Cell Line, Transformed
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Concept
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Base Sequence
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Concept
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Cells
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Concept
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Cell Cycle
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Concept
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DNA Mutational Analysis
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Concept
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Genes
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Concept
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Genes, Bacterial
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Concept
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Genes, Lethal
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Concept
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Genes, Recessive
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Concept
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Oncogenes
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Concept
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Factor Analysis, Statistical
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Concept
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Molecular Sequence Data
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Concept
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Repetitive Sequences, Nucleic Acid
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Concept
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Regression Analysis
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Concept
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Regulatory Sequences, Nucleic Acid
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Concept
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Cluster Analysis
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Concept
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Genome
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Concept
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RNA Splice Sites
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Concept
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Principal Component Analysis
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Concept
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Sequence Alignment
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Concept
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Sequence Analysis, DNA
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Concept
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Genes, Reporter
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Concept
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Consensus Sequence
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Concept
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Sequence Deletion
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Concept
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Genome, Plant
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Concept
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Genetic Pleiotropy
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Concept
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Single-Cell Analysis
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Concept
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Oligonucleotide Array Sequence Analysis
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Concept
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High-Throughput Nucleotide Sequencing
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Concept
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Multivariate Analysis
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Concept
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Open Reading Frames
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Concept
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Genome, Human
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Concept
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Transcriptome
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Concept
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Mendelian Randomization Analysis
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Concept
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Molecular Sequence Annotation
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Concept
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Cell Line, Tumor
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Concept
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Induced Pluripotent Stem Cells
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Concept
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Cell Line
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Concept
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Cells, Cultured
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Concept
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Genes, Neurofibromatosis 1
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Concept
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Conserved Sequence
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Concept
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Sequence Analysis, RNA
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Concept
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Polymorphism, Single Nucleotide
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Concept
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Quantitative Trait Loci
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Concept
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Genetic Loci
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Academic Article
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The effects of genotype-dependent recombination, and transmission asymmetry, on linkage disequilibrium.
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Academic Article
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Genome-wide detection and characterization of positive selection in human populations.
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Academic Article
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Practical issues in imputation-based association mapping.
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Academic Article
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RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays.
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Academic Article
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Genome-wide association of lipid-lowering response to statins in combined study populations.
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Academic Article
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Understanding mechanisms underlying human gene expression variation with RNA sequencing.
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Academic Article
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Interactions between glucocorticoid treatment and cis-regulatory polymorphisms contribute to cellular response phenotypes.
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Academic Article
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Genome-wide efficient mixed-model analysis for association studies.
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Academic Article
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Dissecting the regulatory architecture of gene expression QTLs.
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Academic Article
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Polymorphisms of the HNF1A gene encoding hepatocyte nuclear factor-1 alpha are associated with C-reactive protein.
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Academic Article
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The contribution of RNA decay quantitative trait loci to inter-individual variation in steady-state gene expression levels.
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Academic Article
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Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).
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Academic Article
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A second generation human haplotype map of over 3.1 million SNPs.
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Academic Article
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Comparative RNA sequencing reveals substantial genetic variation in endangered primates.
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Academic Article
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DNase?I sensitivity QTLs are a major determinant of human expression variation.
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Academic Article
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Absence of the TAP2 human recombination hotspot in chimpanzees.
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Academic Article
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High-resolution mapping of expression-QTLs yields insight into human gene regulation.
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Academic Article
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Interpreting principal component analyses of spatial population genetic variation.
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Academic Article
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Genes mirror geography within Europe.
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Academic Article
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Genetic, functional and molecular features of glucocorticoid receptor binding.
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Academic Article
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Response to Cavalli-Sforza interview [Human Biology 82(3):245-266 (June 2010)].
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Academic Article
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A statistical framework for joint eQTL analysis in multiple tissues.
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Academic Article
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Automating resequencing-based detection of insertion-deletion polymorphisms.
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Academic Article
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Analysis of population structure: a unifying framework and novel methods based on sparse factor analysis.
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Academic Article
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Conservation of hotspots for recombination in low-copy repeats associated with the NF1 microdeletion.
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Academic Article
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Epigenetic modifications are associated with inter-species gene expression variation in primates.
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Academic Article
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A unified framework for association analysis with multiple related phenotypes.
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Academic Article
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A statin-dependent QTL for GATM expression is associated with statin-induced myopathy.
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Academic Article
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Imputation-based analysis of association studies: candidate regions and quantitative traits.
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Academic Article
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The genetic architecture of gene expression levels in wild baboons.
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Academic Article
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Integrated enrichment analysis of variants and pathways in genome-wide association studies indicates central role for IL-2 signaling genes in type 1 diabetes, and cytokine signaling genes in Crohn's disease.
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Academic Article
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A multivariate genome-wide association analysis of 10 LDL subfractions, and their response to statin treatment, in 1868 Caucasians.
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Academic Article
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Bayesian statistical methods for genetic association studies.
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Academic Article
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fastSTRUCTURE: variational inference of population structure in large SNP data sets.
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Academic Article
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A comparison of phasing algorithms for trios and unrelated individuals.
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Academic Article
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Automating sequence-based detection and genotyping of SNPs from diploid samples.
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Academic Article
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Linkage disequilibrium-based quality control for large-scale genetic studies.
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Academic Article
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Differential gene induction by type I and type II interferons and their combination.
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Academic Article
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Evidence for substantial fine-scale variation in recombination rates across the human genome.
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Academic Article
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Efficient multivariate linear mixed model algorithms for genome-wide association studies.
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Academic Article
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Modeling linkage disequilibrium and identifying recombination hotspots using single-nucleotide polymorphism data.
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Academic Article
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msCentipede: Modeling Heterogeneity across Genomic Sites and Replicates Improves Accuracy in the Inference of Transcription Factor Binding.
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Academic Article
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A Simple Model-Based Approach to Inferring and Visualizing Cancer Mutation Signatures.
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Academic Article
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Thousands of novel translated open reading frames in humans inferred by ribosome footprint profiling.
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Academic Article
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New evidence for hybrid zones of forest and savanna elephants in Central and West Africa.
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Academic Article
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STATISTICAL INFERENCE OF TRANSMISSION FIDELITY OF DNA METHYLATION PATTERNS OVER SOMATIC CELL DIVISIONS IN MAMMALS.
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Academic Article
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BAYESIAN METHODS FOR GENETIC ASSOCIATION ANALYSIS WITH HETEROGENEOUS SUBGROUPS: FROM META-ANALYSES TO GENE-ENVIRONMENT INTERACTIONS.
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Academic Article
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Visualizing the structure of RNA-seq expression data using grade of membership models.
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Academic Article
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WAVELET-BASED GENETIC ASSOCIATION ANALYSIS OF FUNCTIONAL PHENOTYPES ARISING FROM HIGH-THROUGHPUT SEQUENCING ASSAYS.
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Academic Article
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Large-scale genome-wide enrichment analyses identify new trait-associated genes and pathways across 31 human phenotypes.
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Academic Article
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Silencing of transposable elements may not be a major driver of regulatory evolution in primate iPSCs.
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Academic Article
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Flexible statistical methods for estimating and testing effects in genomic studies with multiple conditions.
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Academic Article
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Inference and visualization of DNA damage patterns using a grade of membership model.
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Academic Article
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Genotyping Polyploids from Messy Sequencing Data.
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Academic Article
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A new sequence logo plot to highlight enrichment and depletion.
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Academic Article
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Correction: A Unified Framework for Association Analysis with Multiple Related Phenotypes.
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Academic Article
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Discovery and characterization of variance QTLs in human induced pluripotent stem cells.
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Academic Article
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Bayesian multivariate reanalysis of large genetic studies identifies many new associations.
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Academic Article
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Characterizing and inferring quantitative cell cycle phase in single-cell RNA-seq data analysis.
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Academic Article
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Mendelian randomization accounting for correlated and uncorrelated pleiotropic effects using genome-wide summary statistics.
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Academic Article
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Cell type-specific genetic regulation of gene expression across human tissues.
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Academic Article
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Dynamic effects of genetic variation on gene expression revealed following hypoxic stress in cardiomyocytes.
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Academic Article
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Separating measurement and expression models clarifies confusion in single-cell RNA sequencing analysis.
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Academic Article
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Fine-mapping studies distinguish genetic risks for childhood- and adult-onset asthma in the HLA region.
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Academic Article
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Fine-mapping from summary data with the "Sum of Single Effects" model.
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Academic Article
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Organism-Wide Analysis of Sepsis Reveals Mechanisms of Systemic Inflammation.
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|
Grant
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Statistical analysis of gene expression quantitative trait loci (eQTL)
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|
Grant
|
Genome analysis: statistical methods and applications
|
|
Academic Article
|
GoM DE: interpreting structure in sequence count data with differential expression analysis allowing for grades of membership.
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|
Academic Article
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A flexible empirical Bayes approach to multivariate multiple regression, and its improved accuracy in predicting multi-tissue gene expression from genotypes.
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Academic Article
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Discussion of "Confidence Intervals for Nonparametric Empirical Bayes Analysis".
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Academic Article
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DISSECTING TUMOR TRANSCRIPTIONAL HETEROGENEITY FROM SINGLE-CELL RNA-SEQ DATA BY GENERALIZED BINARY COVARIANCE DECOMPOSITION.
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Academic Article
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GoM DE: interpreting structure in sequence count data with differential expression analysis allowing for grades of membership.
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Academic Article
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Adjusting for genetic confounders in transcriptome-wide association studies improves discovery of risk genes of complex traits.
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Academic Article
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Accelerated dimensionality reduction of single-cell RNA sequencing data with fastglmpca.
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